CSA011954.1 (CSA011954)

Aliases : CSA011954

Description : Pentatricopeptide repeat-containing protein At1g52620 & original description: none

Gene families : OG0002150 (OrthoFinder) Phylogenetic Tree(s): OG0002150_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSA011954.1
Cluster	HCCA: Cluster_154

Target	Alias	Description	ECC score	Gene Family Method	Actions
ECHA37417	No alias	Pentatricopeptide repeat-containing protein At1g52620 &...	0.11	OrthoFinder
ECHA37417	No alias	Pentatricopeptide repeat-containing protein At1g52620 &...	0.11	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006417	regulation of translation	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	427	475
IPR002885	Pentatricopeptide_repeat	217	266
IPR002885	Pentatricopeptide_repeat	357	404
IPR002885	Pentatricopeptide_repeat	498	546
IPR002885	Pentatricopeptide_repeat	145	196
IPR002885	Pentatricopeptide_repeat	567	616
IPR002885	Pentatricopeptide_repeat	686	734
IPR002885	Pentatricopeptide_repeat	116	134
IPR002885	Pentatricopeptide_repeat	319	349

External Links

No external refs found!