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  5. CSA012966.1

CSA012966.1 (CSA012966, AGO4, OCP11)


Aliases : CSA012966, AGO4, OCP11

Description : Protein argonaute 4 & original description: none


Gene families : OG0018593 (OrthoFinder) Phylogenetic Tree(s): OG0018593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA012966.1
Cluster HCCA: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
ECHA26184 AGO4, OCP11 Protein argonaute 4B & original description: none 0.05 OrthoFinder
FUDINGDABAI22852 AGO4, OCP11 Protein argonaute 4B & original description: none 0.06 OrthoFinder
GWHTAZTZ037051 AGO4, OCP11 Protein argonaute 4B & original description:... 0.03 OrthoFinder
LJCHANGYE28525 AGO4, OCP11 Protein argonaute 4B & original description: none 0.03 OrthoFinder
TIEGUANYIN15251 AGO4, OCP11 Protein argonaute 4B & original description: none 0.11 OrthoFinder
ZHONGCHA23953 AGO4, OCP11 Protein argonaute 4B & original description: none 0.04 OrthoFinder
CSS0028151.3 CSS0028151, AGO4, OCP11 Protein argonaute 4A & original description: gene=CSS0028151 0.05 OrthoFinder
ECHA26184 AGO4, OCP11 Protein argonaute 4B & original description: none 0.05 OrthoFinder
FUDINGDABAI22852 AGO4, OCP11 Protein argonaute 4B & original description: none 0.06 OrthoFinder
GWHTAZTZ037051 AGO4, OCP11 Protein argonaute 4B & original description:... 0.03 OrthoFinder
LJCHANGYE28525 AGO4, OCP11 Protein argonaute 4B & original description: none 0.03 OrthoFinder
TIEGUANYIN15251 AGO4, OCP11 Protein argonaute 4B & original description: none 0.11 OrthoFinder
ZHONGCHA23953 AGO4, OCP11 Protein argonaute 4B & original description: none 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR032473 Argonaute_Mid_dom 462 518
IPR003100 PAZ_dom 271 399
IPR032472 ArgoL2 413 454
IPR032474 Argonaute_N 57 222
IPR003165 Piwi 553 717
IPR003165 Piwi 813 951
No external refs found!