LJCHANGYE08238

Description : Probable RNA methyltransferase At5g51130 & original description: none

Gene families : OG0005085 (OrthoFinder) Phylogenetic Tree(s): OG0005085_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LJCHANGYE08238
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
GWHTAZTZ019094	No alias	Probable RNA methyltransferase At5g51130 & original...	0.03	OrthoFinder
ZHONGCHA10243	No alias	Probable RNA methyltransferase At5g51130 & original...	0.04	OrthoFinder
GWHTAZTZ019094	No alias	Probable RNA methyltransferase At5g51130 & original...	0.03	OrthoFinder
ZHONGCHA10243	No alias	Probable RNA methyltransferase At5g51130 & original...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
MF	GO:0008175	tRNA methyltransferase activity	None	Extended
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEA	Interproscan
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016423	tRNA (guanine) methyltransferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005219	ryanodine-sensitive calcium-release channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005262	calcium channel activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005811	lipid droplet	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	HCCA
BP	GO:0006873	intracellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006874	intracellular calcium ion homeostasis	IEP	HCCA
BP	GO:0007009	plasma membrane organization	IEP	HCCA
CC	GO:0008180	COP9 signalosome	IEP	HCCA
BP	GO:0010387	COP9 signalosome assembly	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0015278	calcium-release channel activity	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015996	chlorophyll catabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	protein-RNA complex assembly	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
BP	GO:0030003	intracellular monoatomic cation homeostasis	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033015	tetrapyrrole catabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046149	pigment catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
MF	GO:0047746	chlorophyllase activity	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
MF	GO:0050525	cutinase activity	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	intracellular chemical homeostasis	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
MF	GO:0070034	telomerase RNA binding	IEP	HCCA
BP	GO:0070206	protein trimerization	IEP	HCCA
BP	GO:0071826	protein-RNA complex organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
MF	GO:0099094	ligand-gated monoatomic cation channel activity	IEP	HCCA
MF	GO:0099604	ligand-gated calcium channel activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901702	salt transmembrane transporter activity	IEP	HCCA
BP	GO:1904868	telomerase catalytic core complex assembly	IEP	HCCA
BP	GO:1905323	telomerase holoenzyme complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003358	tRNA_(Gua-N-7)_MeTrfase_Trmb	102	147

External Links

No external refs found!

LJCHANGYE08238

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation