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  3. Camellia sinensis var. sinensis cv. 'Longjing Changye'
  4. Sequence
  5. LJCHANGYE10527

LJCHANGYE10527


Description : 40S ribosomal protein S12 & original description: none


Gene families : OG0002996 (OrthoFinder) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LJCHANGYE10527
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.02 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.04 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.02 OrthoFinder
CSS0026119.1 CSS0026119 40S ribosomal protein S12 & original description:... 0.05 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.04 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0001405 PAM complex, Tim23 associated import motor IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009399 nitrogen fixation IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0030866 cortical actin cytoskeleton organization IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
CC GO:0034719 SMN-Sm protein complex IEP HCCA
BP GO:0042157 lipoprotein metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 68 161
No external refs found!