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  3. Camellia sinensis var. sinensis cv. 'Longjing Changye'
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  5. LJCHANGYE38477

LJCHANGYE38477 (RACK1C_AT)


Aliases : RACK1C_AT

Description : Guanine nucleotide-binding protein subunit beta-like protein & original description: none


Gene families : OG0007764 (OrthoFinder) Phylogenetic Tree(s): OG0007764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LJCHANGYE38477
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
HUANGJINYA32371 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.05 OrthoFinder
JINXUAN37443 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
HUANGJINYA32371 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.05 OrthoFinder
JINXUAN37443 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000172 ribonuclease MRP complex IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005655 nucleolar ribonuclease P complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
CC GO:0030681 multimeric ribonuclease P complex IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 100 133
IPR001680 WD40_repeat 300 323
IPR001680 WD40_repeat 228 261
IPR001680 WD40_repeat 187 221
IPR001680 WD40_repeat 9 43
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 146 179
No external refs found!