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  3. Camellia sinensis var. sinensis cv. 'Longjing Changye'
  4. Sequence
  5. LJCHANGYE41316

LJCHANGYE41316


Description : Histone-binding protein MSI1 & original description: none


Gene families : OG0002611 (OrthoFinder) Phylogenetic Tree(s): OG0002611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LJCHANGYE41316
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
CSA014241.1 CSA014241 WD-40 repeat-containing protein MSI2 & original... 0.03 OrthoFinder
GWHTACFB009395 No alias Histone-binding protein MSI1 & original description:... 0.03 OrthoFinder
CSA014241.1 CSA014241 WD-40 repeat-containing protein MSI2 & original... 0.03 OrthoFinder
GWHTACFB009395 No alias Histone-binding protein MSI1 & original description:... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000408 EKC/KEOPS complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
BP GO:0001503 ossification IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004529 DNA exonuclease activity IEP HCCA
MF GO:0004536 DNA nuclease activity IEP HCCA
MF GO:0005217 intracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005219 ryanodine-sensitive calcium-release channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005262 calcium channel activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006873 intracellular monoatomic ion homeostasis IEP HCCA
BP GO:0006874 intracellular calcium ion homeostasis IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0008643 carbohydrate transport IEP HCCA
MF GO:0008855 exodeoxyribonuclease VII activity IEP HCCA
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009235 cobalamin metabolic process IEP HCCA
BP GO:0009236 cobalamin biosynthetic process IEP HCCA
BP GO:0009307 DNA restriction-modification system IEP HCCA
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010387 COP9 signalosome assembly IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0015278 calcium-release channel activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
BP GO:0030003 intracellular monoatomic cation homeostasis IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044355 clearance of foreign intracellular DNA IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046332 SMAD binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0055074 calcium ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 intracellular chemical homeostasis IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070034 telomerase RNA binding IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0098657 import into cell IEP HCCA
BP GO:0098704 carbohydrate import across plasma membrane IEP HCCA
BP GO:0098739 import across plasma membrane IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
BP GO:0099046 clearance of foreign intracellular nucleic acids IEP HCCA
MF GO:0099094 ligand-gated monoatomic cation channel activity IEP HCCA
MF GO:0099604 ligand-gated calcium channel activity IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1904868 telomerase catalytic core complex assembly IEP HCCA
BP GO:1905323 telomerase holoenzyme complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 422 458
IPR001680 WD40_repeat 334 367
IPR022052 Histone-bd_RBBP4_N 114 180
No external refs found!