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  3. Camellia sinensis var. sinensis cv. 'Longjing Changye'
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  5. LJCHANGYE46936

LJCHANGYE46936


Description : DEAD-box ATP-dependent RNA helicase 16 & original description: none


Gene families : OG0012332 (OrthoFinder) Phylogenetic Tree(s): OG0012332_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LJCHANGYE46936
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA51474 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
FUDINGDABAI40670 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.04 OrthoFinder
GWHTACFB014778 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
GWHTAZTZ004468 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
HUANGJINYA38179 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.05 OrthoFinder
JINXUAN44482 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
TIEGUANYIN29627 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
ZHONGCHA40143 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
ZIJUAN07086 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder
ANJIBAICHA51474 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
CSS0045534.1 CSS0045534 DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
FUDINGDABAI40670 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.04 OrthoFinder
GWHTACFB014778 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
GWHTAZTZ004468 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
HUANGJINYA38179 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.05 OrthoFinder
JINXUAN44482 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
TIEGUANYIN29627 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
ZHONGCHA40143 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.02 OrthoFinder
ZIJUAN07086 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005102 signaling receptor binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
CC GO:0000347 THO complex IEP HCCA
CC GO:0000408 EKC/KEOPS complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
BP GO:0001503 ossification IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004529 DNA exonuclease activity IEP HCCA
MF GO:0005126 cytokine receptor binding IEP HCCA
MF GO:0005137 interleukin-5 receptor binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005217 intracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005219 ryanodine-sensitive calcium-release channel activity IEP HCCA
MF GO:0005262 calcium channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
CC GO:0005762 mitochondrial large ribosomal subunit IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006873 intracellular monoatomic ion homeostasis IEP HCCA
BP GO:0006874 intracellular calcium ion homeostasis IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006955 immune response IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
BP GO:0008643 carbohydrate transport IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0008855 exodeoxyribonuclease VII activity IEP HCCA
MF GO:0008962 phosphatidylglycerophosphatase activity IEP HCCA
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009235 cobalamin metabolic process IEP HCCA
BP GO:0009236 cobalamin biosynthetic process IEP HCCA
BP GO:0009307 DNA restriction-modification system IEP HCCA
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0015278 calcium-release channel activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016895 DNA exonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0030003 intracellular monoatomic cation homeostasis IEP HCCA
CC GO:0030008 TRAPP complex IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044355 clearance of foreign intracellular DNA IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0046332 SMAD binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0055074 calcium ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 intracellular chemical homeostasis IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
MF GO:0070851 growth factor receptor binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0072546 EMC complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098657 import into cell IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098704 carbohydrate import across plasma membrane IEP HCCA
BP GO:0098739 import across plasma membrane IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0099046 clearance of foreign intracellular nucleic acids IEP HCCA
MF GO:0099094 ligand-gated monoatomic cation channel activity IEP HCCA
MF GO:0099604 ligand-gated calcium channel activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 264 406
IPR011545 DEAD/DEAH_box_helicase_dom 48 225
No external refs found!