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  3. Camellia sinensis var. sinensis cv. 'Longjing Changye'
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  5. LJCHANGYE56195

LJCHANGYE56195 (MEF1)


Aliases : MEF1

Description : Putative pentatricopeptide repeat-containing protein At5g52630 & original description: none


Gene families : OG0010825 (OrthoFinder) Phylogenetic Tree(s): OG0010825_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LJCHANGYE56195
Cluster HCCA: Cluster_253


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005942 phosphatidylinositol 3-kinase complex IEP HCCA
CC GO:0005944 phosphatidylinositol 3-kinase complex, class IB IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035014 phosphatidylinositol 3-kinase regulator activity IEP HCCA
BP GO:0042157 lipoprotein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046935 1-phosphatidylinositol-3-kinase regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex organization IEP HCCA
MF GO:0090729 toxin activity IEP HCCA
CC GO:0097651 phosphatidylinositol 3-kinase complex, class I IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 106 135
IPR002885 Pentatricopeptide_repeat 206 230
IPR002885 Pentatricopeptide_repeat 279 304
IPR002885 Pentatricopeptide_repeat 379 403
IPR002885 Pentatricopeptide_repeat 178 205
IPR032867 DYW_dom 478 601
IPR002885 Pentatricopeptide_repeat 305 351
No external refs found!